Previous maps:
Uncanny X-Men #94-280
X-Men 1991-1994
X-Men 1995-2000
2001-2008

Messiah Complex
Messiah Complex #1
UXM #492
X-Factor #25
New X-Men #44
X-Men #205
UXM #493
X-Factor #26
New X-Men #45
X-Men #206
UXM #494
X-Factor #27
New X-Men #46
X-Men #207

Divided We Stand (TPB)
DWS #1-2

Uncanny X-Men:  Divided We Stand (TPB)
UXM #495-499

X-Force:  Legacy of Vengeance
X-Force #1-11

Ghost Boxes (TPB/HC)
AXM #25-30
Ghosts Boxes #1-2

UXM:  Manifest Destiny (HC)
X-Men:  FCBD
UXM #500-503
selected stories from Manifest Destiny #1-5

X-Men Legacy:  Divided He Stands
X-Men:  Legacy #208-216
Wolverine:  Origins #28
Original Sin #1
X:L #217
W:O #29
X:L #218
W:O #30
X:L #219-225

X-Men:  Manifest Destiny (HC)
selected stories from Manifest Destiny #1-5
Wolverine: MD #1-4
MD:  Nightcrawler

Lovelorn (TPB)
UXM #504-507
UXM Annual #2

(Technically, Annual #2 goes between #505 and 506, but putting it at the end doesn’t screw up the story too much.)

Cable:  Messiah Warrior
Cable #1-6
King Sized Cable
Cable #7-12

Messiah War
X-Force #12-13
Messiah War #1
Cable #13
X-Force #14
Cable #14
X-Force #15
Cable #15
X-Force #16
X-Force #17-20
The Life and Times of Lucas Bishop #1-3
Messiah War:  Future History Sourcebook

(Future History is optional.  I included it because it was in the trade.)

Sisterhood (TPB)
UXM #508-512

Dark Avengers/X-Men:  Utopia (HC)
Utopia
UXM #513
Dark Avengers #7
UXM #514
DA #8
Exodus
XM:L #226-227
Dark X-Men:  Beginning #1-3
Dark X-Men:  The Confession

(That’s not the exact order, but as noted, I got the official hardcover.  Also, New Mutants #1-5 and Astonishing X-Men #31-35 probably go somewhere in the midst of this.  But I’m planning on getting those in trades.)

Nation X
X-Men: Legacy Annual #1
X-Men: Legacy #228-230
UXM #515-517
Nation X #1 (all stories)
Nation X #3 (first story)
Necrosha:  The Gathering #1
Necrosha X #1
X-Force #21
New Mutants #6-8
X-Force #22-23
X-Men: Legacy #231-233
X-Force #24-25
Nation X #3 (third story)
UXM #518-519
Nation X #2 (first two stories)
New Mutants #9-10
Nation X #3 (second story)
Nation X #4 (second story)
X-Men Legacy #234
UXM #520-522
Nation X #4 (first, third and fourth stories)
Nation X #2 (third and fourth stories)
Nation X #3 (fourth story)

(I had to combine Nation X and Necrosha X, because Necrosha took place in between Nation X issues.  Also, the Emplate arc from X-Men Legacy can stand on its own.  I included it here because the copy of the TPB I got from Amazon was slightly messed up.  Also, the Nation X limited series can probably be placed in various places.  The first story of #1 has to take place between UXM #517-518, though.  More than likely, when I finally get this bound, those Nation X anthology stories will move around.)

Cable:  Homecoming
Cable #16-20
X-Men:  Hope
Cable #21-25

Second Coming
Second Coming:  Prepare (prelude story only)
Second Coming #1
UXM #523
New Mutants #12
Legacy #235
X-Force #26
UXM #524
NM #13
Legacy #236
X-Force #27
UXM #525
NM #14
Legacy #237
X-Force #28
Second Coming #2

(For the extra features in Second Coming:  Prepare, I will most likely include the cover previews at the back of Second Coming.  The Phoenix Force feature will go either at the end of Nation X or Homecoming.)

At this point, I seriously cut back on my X-Men collecting, so the next few volumes aren’t completely comprehensive.  For one thing, I dropped X-Men Legacy.

The Heroic Age
Uncanny X-Men:  The Heroic Age #1
UXM #526-534
Generation Hope #1-5
Deadpool and Cable #26

(I left the backup story for UXM #526 in place.)

Escape from the Negative Zone (HC)
UXM Annual #3
Super Soldier Annual #1
Namor Annual #1

Dark Angel Saga
Uncanny X-Force #1-4, 5.1, 5-18

Hope and Fear
UXM #534.1
Generation Hope #6-9
UXM #535-543

Schism
Schism #1-3
Generation Hope #10-11
Schism #4-5
X-Men: Regenesis #1
Generation Hope #12
Uncanny X-Men #544

(Some of the Generation Hope issues could be spliced around Schism and Regenesis issues, but they also work unspliced, in a sort of flashback or replay capacity.  Although, if GH #12 didn’t share pages with the Regenesis excerpt, I would likely splice that issue.)